Plug-and-play proteomics analysis plugin

Project overview

A plug-and-play proteomics analysis plugin for DeepSeek Harness. It wraps a full protein-expression analysis workflow — normalization → PCA → batch correction → differential analysis → GO/KEGG enrichment → GSEA — behind a conversation: give the agent your data file, answer a few questions (which columns are what, which groups to compare), and the plugin prepares everything automatically and walks through every step with visible summaries and figures, ending with an interpretation report.

No R, no Docker, no terminal knowledge required: the plugin detects or silently installs its own R 4.4.0 runtime and package library on first use (one-time, 10–20 min). Install

Prerequisites: Node.js (bundles npx) and pnpm — npm install -g pnpm.